What is Short-Chain Fatty Acid / Butyrate Biosynthesis Pathway Potential?
Shotgun metagenomic sequencing recovers microbial genes, allowing the community's functional potential to be inferred — for example the abundance of pathways encoding butyrate and other short-chain fatty acid synthesis. This describes what the community is genetically equipped to do, which is distinct from what it actually produces in vivo, since metabolite output depends on substrate availability, transit, and host uptake.